Key points
- Clinical laboratories can provide diagnostic testing for Chlamydia pneumoniae infections.
- There are multiple Food and Drug Administration (FDA)-cleared laboratory tests for the detection of C. pneumoniae infection.
- Nucleic acid amplification tests (NAAT), including real-time polymerase chain reaction (PCR), are the preferred method of diagnostic testing for acute C. pneumoniae infection.
- Learn about the different laboratory methods to test for C. pneumoniae infection.

Lab methods
Clinical laboratories can provide diagnostic testing for C. pneumoniae infections using molecular methods, serology, or culture.
There are multiple FDA-cleared tests for the detection of C. pneumoniae infection. Respiratory pathogen panels are the most common test method performed in clinical laboratories.
Molecular tests, including NAATs, offer high sensitivity and specificity and provide timely results for treatment decisions. These tests can also determine antibiotic susceptibilities.
Serological testing is performed in some clinical laboratories but lacks specificity. It often requires multiple patient visits to collect acute and convalescent paired sera specimens (time-sensitive sampling).
Culture of C. pneumoniae is performed by specialized reference laboratories, but it's time-consuming and not optimal for treatment decisions.
Laboratory guidelines
CDC recommendations by method
Molecular
- Best method for the diagnosis of an acute C. pneumoniae infection
- Preferred method: NAAT, such as real-time PCR, or respiratory pathogen panel
- Don't diagnose an acute infection based on single IgG titers
- Preferred method: Microimmunofluorescence
- Non-endorsed methods: Complement fixation, EIA, and whole-inclusion fluorescence
Culture
- Confirm positive results by an additional test, such as NAAT
Additional information on non-endorsed methods
The following tests aren't recommended for diagnosis of C. pneumoniae because of low sensitivity and insufficient evaluation:
- Complement fixation
- EIA
- Whole-inclusion fluorescence tests
Additional information about microimmunofluorescence
Microimmunofluorescence is the only species-specific antibody test available that can measure isotype-specific antibody titers to all Chlamydia species simultaneously. However, this testing is technically complex and interpretation is subjective.
Submitting specimens
Public health department laboratory staff can forward approved specimens to CDC for specialized testing.